Papers

Mechanisms underlying a thalamocortical transformation during active tactile sensation.

Gutnisky DA, Yu J, Hires SA, To MS, Bale M, Svoboda K, Golomb D. Mechanisms underlying a thalamocortical transformation during active tactile sensation. PLoS Comput Biol. 2017;13(6):e1005576.

Layer 4 fast-spiking interneurons filter thalamocortical signals during active somatosensation.

Yu J, Gutnisky DA, Hires SA, Svoboda K. Layer 4 fast-spiking interneurons filter thalamocortical signals during active somatosensation. Nature Neuroscience 2016;

Beyond cones: An improved model of whisker bending based on measured mechanics and tapering.

Hires SA^, Schuyler A, Sy J, Huang V, Wyche I, Wang X, Golomb D. Beyond cones: An improved model of whisker bending based on measured mechanics and tapering. J Neurophysiol. 2016 Jun 1:jn.00511.2015. doi: 10.1152/jn.00511.2015.

Neural coding during whisker-guided locomotion.

Sofroniew NJ, Vlasov YA, Hires SA, Freeman J, Svoboda K. Neural coding during whisker-guided locomotion. eLIFE. 2015 Dec 23;4. pii: e12559. doi: 10.7554/eLife.12559.

Low-noise encoding of active touch by layer 4 in the somatosensory cortex.

Hires SA*, Gutnisky D*, Yu J, O’Connor DH, Svoboda K; Low-noise encoding of active touch by layer 4 in the somatosensory cortex. eLIFE 2015 Aug 6; 10.7554/eLife.06619

Procedures for Behavioral Experiments in Head-Fixed Mice

Guo Z; Hires SA; Li N; O’Connor D; Komiyama T; Ophir E; Huber D; Bonardi C; Morandell K; Gutnisky D; Peron S; Xu N; Cox J; Svoboda K. “Procedures for behavioral experiments in head-fixed mice”. (in press) https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3919818/

Tapered whiskers are required for active tactile sensation

Hires SA, Pammer L, Svoboda K, Golomb D. Tapered whiskers are required for active tactile sensation eLife, 2013 Nov 19;2:e01350. doi: 10.7554/eLife.01350. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3828597/

Neural coding during active somatosensation revealed using illusory touch

O’Connor DH*, Hires SA*, Guo ZV, Li N, Yu J, Sun QQ, Huber D, Svoboda K; Neural coding during active somatosensation revealed using illusory touch. Nature Neuroscience 2013 Jun 2; 16(7):958-65 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3695000/?report=classic

Aβ induces astrocytic glutamate release, extrasynaptic NMDA receptor activation, and synaptic loss

Talantova M*, Sanz-Blasco S*, Zhang X*, Xia P*, Akhtar MW, Okamoto S, Dziewczapolski G, Nakamura T, Cao G, Pratt AE, Kang YJ, Tu S, Molokanova E, McKercher SR, Hires SA, Wolosker H, Sason H, Solomon J, Powers ET, Kelly JW, Roberts AJ, Tong G, Zhang D, Nakanishi N, Chen HSV, Michael S, Masliah E, Heinemann SF, Piña-Crespo JC, Lipton SA. Aβ induces astrocytic glutamate release, extrasynaptic NMDA receptor activation, and synaptic loss Proc Natl Acad Sci U S A 2013 Jul 2;110(27):E2518-27 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3704025/?report=classic

The Mechanical Variables Underlying Object Localization along the Axis of the Whisker

Pammer L*, O’Connor, DH*, Hires SA, Efros AL, Clack N, Huber D, Myers EW, Svoboda K. The mechanical variables underlying object localization along the axis of the whisker. J Neuroscience 2013 Apr 17;33(16):6726-41  https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3733083/?report=classic

An optimized fluorescent probe for visualizing glutamate neurotransmission

Marvin JS, Borghuis BG, Tian L, Cichon J, Harnett MT, Akerboom J, Gordus A, Renninger S, Chen TW, Bargmann CI, Orger MB, Schreiter ER, Demb JB, Gan W, Magee JC, Hires SA, Looger LL An optimized fluorescent probe for visualizing glutamate neurotransmission. Nature Methods. 2013 Feb;10(2):162-70.  https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4469972/?report=classic

Automated Tracking of Whiskers in Videos of Head Fixed Rodents

Clack NG, O’Connor DH, Huber D, Petreanu L, Hires SA, Peron S, Svoboda K, Myers EW. Automated tracking of whiskers in videos of head fixed rodents. PLoS Comput Biol. 2012 Jul; 8(7):e1002591 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3390361/?report=classic

Imaging neural activity in worms, flies and mice with improved GCaMP calcium indicators

Tian L, Hires SA, Looger LL. Imaging neuronal activity with genetically encoded calcium indicators. Cold Spring Harb Protoc. 2012 Jun 1;2012(6):647-56. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2858873/?report=classic

Concurrent Imaging of Synaptic Vesicle Recycling and Calcium Dynamics

Li H, Foss SM, Dobryy YL, Park CK, Hires SA, Shaner NC, Tsien RY, Osborne LC, Voglmaier SM. Concurrent imaging of synaptic vesicle recycling and calcium dynamics. Front Mol Neurosci. 2011;4:34. Epub 2011 Nov 2. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3206542/?report=classic

Laminar Analysis of Excitatory Local Circuits in Vibrissal Motor and Sensory Cortical Areas

Hooks BM, Hires SA, Zhang YX, Huber D, Petreanu L, Svoboda K, Shepherd GM. Laminar analysis of excitatory local circuits in vibrissal motor and sensory cortical areas. PLoS Biol. 2011 Jan 4;9(1):e1000572. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3014926/?report=classic

Imaging neural activity in worms, flies and mice with improved GCaMP calcium indicators

Tian L, Hires SA, Mao T, Huber D, Chiappe ME, Chalasani SH, Petreanu L, Akerboom J, McKinney SA, Schreiter ER, Bargmann CI, Jayaraman V, Svoboda K, Looger LL. Imaging neural activity in worms, flies and mice with improved GCaMP calcium indicators. Nat Methods. 2009 Dec;6(12):875-81. Epub 2009 Nov 8. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2858873/?report=classic

Crystal Structures of the GCaMP Calcium Sensor Reveal the Mechanism of Fluorescence Signal Change and Aid Rational Design

Akerboom J, Rivera JD, Guilbe MM, Malavé EC, Hernandez HH, Tian L, Hires SA, Marvin JS, Looger LL, Schreiter ER. Crystal structures of the GCaMP calcium sensor reveal the mechanism of fluorescence signal change and aid rational design. J Biol Chem. 2009 Mar 6;284(10):6455-64. Epub 2008 Dec 18. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2649101/?report=classic

Reporting neural activity with genetically encoded calcium indicators

Hires SA, Tian L, Loren Looger. Neural Activity Reporting with Genetically Encoded Calcium Indicators. Brain Cell Biology 2008 Aug;36(1-4):69-86 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2755531/?report=classic

Optical measurement of synaptic glutamate spillover and reuptake by linker optimized glutamate-sensitive fluorescent reporters

Hires SA, Zhu Y, and Tsien RY. Optical measurement of synaptic glutamate spillover and reuptake by linker optimized glutamate-sensitive fluorescent reporters. Proc Natl Acad Sci U S A. 2008 Mar 18;105(11):4411-6  Supplemental Information https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2393813/?report=classic

Reporting neural activity with genetically encoded calcium indicators

Palmer AE, Giacomello M, Kortemme T, Hires SA, Lev-Ram V, Baker D, and Tsien RY. 2006. Ca2+ Indicators based on computationally redesigned calmodulin-peptide pairs. Chemistry & Biology 13, 521–530 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2755531/?report=classic

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